Scaffold Ga0208975_1015297

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1015297
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2578
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011755	Metagenome	287	Y
F013987	Metagenome	266	Y
F082594	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10152972	F013987	N/A	MGLREEKQRILPALDKATEEAQRQGFITELDLAGIAALFTIAGVLDSGLLKPMEEIKYLSQLQSGLDKYGLSLFGRKEKPELEVGEDPLDDLRKLNPENSDHTTDSPN
Ga0208975_10152974	F011755	N/A	MSDIIYLHYHYDYENSKEWVCKDAKCYQKRLEDRKKLEAYQELVDRDLCCKDNLQMIEDLIQDPRIDDYR
Ga0208975_10152976	F082594	AGGGGG	MKPQDVYRLEKVLRASISQDLLNRRNDFRNQDDMEEARKIVEQKH