Scaffold Ga0208975_1011368

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1011368
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3047
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F082704	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10113685	F021113	AGGA	MNRNILAAILLFIGTSILWLVICWNIWGCTDKKSVQENVQKQDSIINYNAGEYDRLLQEQIELYKQLRTYEDAQSTAKTTYQRTRSAIVIRDTITVVDVIRLVNSCDSVIASDSLVIDNLKEQINIEEEKIDNLQETVGAYEQKSDILSEEINTLNADKKKLEKQKKRRNHALIVTSSVAILSTFVLAILL
Ga0208975_10113686	F082704	AGAAG	MAQSKTKKGICVYLHKDLWNEIDEKRGENSRNIFLSEAIQFSMKFYVEESKVKLQEQKST
Ga0208975_10113687	F019140	N/A	MKQTPLYETLKMTYEREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMSKTKEENGAEQN