NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1011368

Scaffold Ga0208975_1011368


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1011368 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3047
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019140Metagenome / Metatranscriptome231N
F021113Metagenome / Metatranscriptome220Y
F082704Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10113685F021113AGGAMNRNILAAILLFIGTSILWLVICWNIWGCTDKKSVQENVQKQDSIINYNAGEYDRLLQEQIELYKQLRTYEDAQSTAKTTYQRTRSAIVIRDTITVVDVIRLVNSCDSVIASDSLVIDNLKEQINIEEEKIDNLQETVGAYEQKSDILSEEINTLNADKKKLEKQKKRRNHALIVTSSVAILSTFVLAILL
Ga0208975_10113686F082704AGAAGMAQSKTKKGICVYLHKDLWNEIDEKRGENSRNIFLSEAIQFSMKFYVEESKVKLQEQKST
Ga0208975_10113687F019140N/AMKQTPLYETLKMTYEREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMSKTKEENGAEQN

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