Scaffold Ga0208975_1009140

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1009140
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3468
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009887	Metagenome	311	Y
F026555	Metagenome	197	N
F033425	Metagenome / Metatranscriptome	177	Y
F045093	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10091401	F045093	AGTAGG	METQNARPLKIVANGKPKKKLGRHTNAMVKSLTGRNDIDQVKREMLLGLARAWDRIEESGKGGHTIPSISKELREIWDSCALPDEDDLFE
Ga0208975_10091403	F033425	GAGG	MAIITSQVTVTGTSQSIISVDNVTRDVLLHAKHEVFIGNSGVTSTSGYILDNGDELRLSLVDGEDLWAVTAGGSGTLHVLVSKVD
Ga0208975_10091407	F026555	GAG	MSKFDYHKAMRDGHGYNIYVADLLASFGIPKVDVPKFSIATTHDQIRDKTLNEKDIVVDDLILEVKSSSRSFTDVDDFPHNPLIVDTVYGFDSKIIKPFAYVIISQITHNLFVIPVSTKYDWGIQEYYDSQRDITERFYMVQKRHCRPFIELVDVLLERANERTNQMQ
Ga0208975_10091408	F009887	N/A	MGDMEMIDPQGVRARFTDDGVEVDIVPFSECCEFCNDPRMMNVNGVRRCAGCGCINHIEYRVHE