Scaffold Ga0208975_1007198

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1007198
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3978
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F015420	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10071982	F003299	N/A	MCRLKTMTMKRYKVVFKTFDYWNGPVKLVTRIVEAYDADHVKQLIQKNDDLILLIEEI
Ga0208975_10071983	F003327	N/A	MNEFTQLAREVQDAIANGDYTHQKYLQFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNNDNEEI
Ga0208975_10071984	F004234	N/A	MNFINLFKRDNTYFSNWTTDYDSDVYIAGTIEPFTYNATETDDGDMSLFILSDANLNLLKSKL
Ga0208975_10071985	F015420	N/A	MKKLINYFTPVGAEQIAFAKTLMVVVTAIISILFLFPLLNLLS