NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1002789

Scaffold Ga0208975_1002789


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1002789 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6824
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010619Metagenome / Metatranscriptome301Y
F019602Metagenome / Metatranscriptome228N
F100405Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10027892F100405AGGAMTKSVQQYTKIFEVLQAANAPVPVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRANRDGRTVVSYELVGAGTAPVAKPAKVKAVKAPVVKAAKPVVAKAKKVTPVPVRAGDSLDGIMSAMAKSSAKKPVNLLDEIDTDVEDFEDRAFAEAYIRT
Ga0208975_10027893F019602GGAMDDRAVVIERYILEAWDQGLTGADVVTYVQYMSSIPVFEIEPVLQNLIARMSE
Ga0208975_10027896F010619GGAGMEDPIDFENSHPHMEKIIKSDKLLPITKSVAKMLMRNPYTSLGKFFKTISDDNLLALAEIIEEGDSEFNDGIEDVVLMTEMLSRAEGVPSQCIEDITENVNYFGVCVTCVSLARKGLVRVYYDNMSFGREEGDKILVEKI

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