Scaffold Ga0208975_1001492

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1001492
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9875
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F009398	Metagenome / Metatranscriptome	318	N
F032255	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100149210	F005024	GGAG	MTVDSGKFDLAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGAPAGNLNRKSKKTGKRIGTSRILRRVHLIVQAKAAKNPTVNLNGGHGLYGKAMKAAASALMKRSIASVGYLRSAVVKSIRIYNRGFTQFQSPKWKPLSKPASYRAPKKTNSALVAMANEYGLPQENVGIHKGTVAHGFQAVPGFNPTAFVSMRTGVADNQYNRVSEIYNTAMQKAMDDETTEMINHMTEALLANGKVLEDNGISIK
Ga0208975_100149211	F009398	N/A	MTTIGSSLQQGMTVLQQMLGAPMFIWEGTSIRCIPAAINDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGGYYNLELGAKTK
Ga0208975_100149215	F001272	N/A	VAVGSGAASGCGCRSFRPMIKIELTQEQTNSLLQLIDIAIKAGGYQNAKVGVPLADLILDAAKPKSE
Ga0208975_10014928	F032255	N/A	MANSQGLAYQFGSPASVTMLDTDNSTPIFTALASIESYDLTHESDTEEVRNSGGEVVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVSITGAPVIKMMGVADVLNSGRFIYAGGGSVKMTQSGKAMVSITVKRFKNLTTAAAVALNV
Ga0208975_10014929	F006107	GGA	MNAVALRAELAVADYLAAANWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEIEIAVELQLSADDTDEAAVLTTVQVLDNLILPLFDDAGASTLDAAANDPSGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATT