Scaffold Ga0208975_1000739

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000739
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15071
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (52.17%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001872	Metagenome / Metatranscriptome	623	Y
F002421	Metagenome / Metatranscriptome	560	N
F002794	Metagenome / Metatranscriptome	529	Y
F003964	Metagenome	459	Y
F009743	Metagenome / Metatranscriptome	313	N
F014971	Metagenome	258	Y
F033005	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10007391	F033005	AGG	MTRKLTEHDTTIYKQARAELLRDSPICHWCKKNTATELDHLVESDKGGTIEDGYVASCKSCNSARGATYRNKKLANAKQNREKAINDFLYSDLM
Ga0208975_100073912	F014971	AGGA	MTYEEAIAMYPHSEIHIQIDDVVRPMTPAEYEEFIQRQVDAPPAS
Ga0208975_100073916	F003964	GGAG	VNEVSAKIEVVGLKEALKTLNKIDKSLRREITKDYKKIVQPVIDDANALVPTGVPLSGMARNWSTKSGFKMLPWVPGMKQKIAAKINTQNIKEYGGNKSNVGTFLIQWQGATGTMFDMSKEGALGRQLTARYGERSRVMWKAYVQRENDVMSEMGQLVKRVMDEANRETA
Ga0208975_100073917	F009743	AGGAG	MKIKLQLKRTPDSAPEYYSTNLFVITEWERLERRNIQQLSASPLYSDYACWMHTILKLKGEQVGDNWREWISKNPDIDILPVLDETDPNPTDAAPSAAN
Ga0208975_10007395	F002421	AGGAG	MKTCTICKEQIAYPEITGKTHFVCDGRVPAQKNAPFIEGMLASQSSADARWTRPQQNEVDAAIVHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGAHDHAQRLSVWAAI
Ga0208975_10007396	F002794	N/A	MERKMSEGVAWNQGELSEETRRMVLEQAMQTNHTMAMFDLIDDIMAVKKNPHASIIQRLKGMKNSLSLEDPMPLHDVTTLDLAIKALQAHS
Ga0208975_10007398	F001872	N/A	MQALGVSIAKAKPGVPNARDYIGNADGASPAPRAGMNEWIKQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKNPKAGRKEALVFIDKLVANANDLGLQCILDYFPEPQGRAWRCDRYAWLKYDKPTIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKDTPIP