Scaffold Ga0208975_1000419

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000419
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21125
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (75.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017968	Metagenome	237	Y
F029755	Metagenome	187	Y
F051918	Metagenome	143	Y
F065786	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100041913	F017968	N/A	MKPQQSLIVSEKANNLATLSLQERLNLRETMKQTEALEWIRRYRKKALEEGRGEAQYWWQQTLLDIAKKRGQAAADDLRKRMNEQKDKK
Ga0208975_100041917	F029755	AGGA	MTDYKLHYYFDDVVSYDSGTTLENVKVGYDYYPAEINMPHDHNSAEIYDVFVFNLKGDNISCDLPLSEFQHIMSETKIHHARMLKEQNEI
Ga0208975_100041919	F051918	GGAG	MIEQLKDYFRLPSAKELAVSELEMAHRKLLVALSAQEYAKRMCDYHSDRIKRLTAYLKEE
Ga0208975_100041924	F065786	GAGG	MTKDDLVALLRMTGVQEASIEAVCAAYDAGWNDALDDYAKRLEALSFGKDTIDSFSVFIKSAKK