Scaffold Ga0208975_1000162

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000162
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35626
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (44.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011740	Metagenome	287	N
F013396	Metagenome	271	N
F017799	Metagenome	238	N
F024061	Metagenome / Metatranscriptome	207	N
F063471	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10001621	F011740	N/A	VNSITTADRFATCVTTYDAARGTAQLSCEIMERLVEMHEMRHTSAADLCRRLGTLADLSPSMFLTTVRLGSGDVHAVRQSFAEMAEQTGRTRQALHYEWAHEVAKVRMVFPELAQLMADYRQSTDEPERGDSEEGR
Ga0208975_100016213	F024061	AGGGGG	MNTGEIKNQAVINNATEQFRSLLETHFVAIARAAEESFVEEENQTEPKAKASFAVEWDALSLAPKVVVKIGWSVRYKDETESMVDPLQSKLGLVEEAK
Ga0208975_10001622	F017799	GGA	METNNDNERRELEALRFSSRAARAITTLEVQRKAIGREYGERIKKIKALILILQQRESLGQMGIEGIDAVEITPELKKLIYNPVGDLS
Ga0208975_100016234	F063471	N/A	MYTNSAAIFRGDIAGVVEQAKDYEAGLIGVQAMPILDVPVRAGQYPSFVLKEGQLLKSDVKNRAAYSAYARGTRAFNQDTYTALEYGYEEAVDDTVTLDVARFFDAEVIAAKLAKRKLLLAHELRVAAKLFDNSTFTATNSGTAYTTANLATFDVGADVQEATDRLLSKGESVTNLSVIIPYPVWTRIRASTKFQNRLRGAGISSDTILNASTQAAAEVFGVSQVLIGRASYDTAPEGVAFSAGNVWANTFIWVGSVTQASAGFFGGGAGFTLNWSEYGPAIGVSTYREEAIKSNIVRASHFVAEKVVNANAGQLITTQYS
Ga0208975_100016240	F013396	N/A	VNLKRSLFLAVLALGLVVVLGLALRSERVLTAGLPLRIVAKTQDEARTLAGLGAVAVLGTGSMAPYIAAAPAGTDPLATVMAYVVTVQGATIADVKAGSLCIYIPEWAGRHVMHQAASFSEGGWIMTGLGTKTYENAERMTGRNFVGIVSRTYIWP