Scaffold Ga0208975_1000125

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000125
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39107
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072098	Metagenome / Metatranscriptome	121	Y
F095136	Metagenome / Metatranscriptome	105	N
F102822	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100012529	F095136	AGG	MFYINGKRATAERRVNGMTNEVNKQLLDALEAMCEIYIPEDESLENDAVAGYAMNILETARKIEVAYKSKPLPEDDVWDLVKDINPHDPMYPIHFARAVERKHGIGA
Ga0208975_100012534	F102822	N/A	MNDVYLREYYTSYTLKNNLSIEFDKFKNLVRLVESHHGIDDDNEAQDALENIEQEIIARACRSGVCED
Ga0208975_100012549	F072098	N/A	MSQHRYVGLIDGEKMRGFHSRVELEHWLRDKPEATFIKYSVKREKKPKLDLSEYELAPF