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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027659 Open in IMG/M |
| Scaffold ID | Ga0208975_1000111 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 41074 |
| Total Scaffold Genes | 62 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (83.87%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001396 | Metagenome / Metatranscriptome | 705 | Y |
| F052563 | Metagenome / Metatranscriptome | 142 | N |
| F057330 | Metagenome / Metatranscriptome | 136 | N |
| F071195 | Metagenome / Metatranscriptome | 122 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208975_100011116 | F057330 | GAG | MRPVIVLWDDAYSEDEWMSVEHYNPKPETPNISIGYIVAYNNDYVHIASTIDQDGGNCCGIMAIPYDMIVYVAPLQILSEAKMYGDKEEFERYLQGKFAQRAEVYEFTEPAEISSETNPEPSV |
| Ga0208975_100011118 | F052563 | N/A | MSNRGPEDWIYDIIPAKQVEEIESKAKSLQHNLDNGLNVVLSATNDSAIRLCKAYYDSTQGNMQAWLHIMGFLDALIGTIEQHLEEEGIDPYAK |
| Ga0208975_100011151 | F071195 | AGGTGG | MTTTNDAMYVALKAQYPTLSTLGDMMYAFAQDNGYNFRDTLGYEFYAATGAVGTTRGDLANSYWNDPDFAVSNLEMEDGNDLLLENEGFILMEIGNG |
| Ga0208975_100011161 | F001396 | GGA | MALTPSPLAVVGFNAMPEIWVPIVVAVITGPAVVVLSKLRKENSEQHAEGRELLQAIGTKVDKVGSKLDEHIGWHKGKEDK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |