NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1000111

Scaffold Ga0208975_1000111


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1000111 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41074
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (83.87%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001396Metagenome / Metatranscriptome705Y
F052563Metagenome / Metatranscriptome142N
F057330Metagenome / Metatranscriptome136N
F071195Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0208975_100011116F057330GAGMRPVIVLWDDAYSEDEWMSVEHYNPKPETPNISIGYIVAYNNDYVHIASTIDQDGGNCCGIMAIPYDMIVYVAPLQILSEAKMYGDKEEFERYLQGKFAQRAEVYEFTEPAEISSETNPEPSV
Ga0208975_100011118F052563N/AMSNRGPEDWIYDIIPAKQVEEIESKAKSLQHNLDNGLNVVLSATNDSAIRLCKAYYDSTQGNMQAWLHIMGFLDALIGTIEQHLEEEGIDPYAK
Ga0208975_100011151F071195AGGTGGMTTTNDAMYVALKAQYPTLSTLGDMMYAFAQDNGYNFRDTLGYEFYAATGAVGTTRGDLANSYWNDPDFAVSNLEMEDGNDLLLENEGFILMEIGNG
Ga0208975_100011161F001396GGAMALTPSPLAVVGFNAMPEIWVPIVVAVITGPAVVVLSKLRKENSEQHAEGRELLQAIGTKVDKVGSKLDEHIGWHKGKEDK

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