Scaffold Ga0208975_1000083

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000083
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46453
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (60.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007163	Metagenome / Metatranscriptome	356	Y
F029985	Metagenome	186	Y
F073246	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100008358	F007163	GAGG	MTLEDLQHIFDRQIEDGTERLYFMLVDGDRMPVVERHPADDLAGLLPMLSHFQYHGNELMPRFRK
Ga0208975_100008363	F073246	N/A	MELSMTPDHNLLCQTRSLYNEPYHIVRPLLPIRMQHGPRMIEWAAHKFGPAGERVRGIVGQTVKVEKPGLRYYVDPTAFWFRYVVDRDCFVAHWTKELKND
Ga0208975_100008382	F029985	AGAAG	MWGDEMYTLNKIVIATVLSTLCLSTMVASSPMYGGNRSSVAQELPAREREVRLNHGVAECVRTAWIGDINNRIVICVEYRLKKEVK