NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1000019

Scaffold Ga0208975_1000019


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1000019 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)97955
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (17.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004953Metagenome / Metatranscriptome417Y
F069688Metagenome / Metatranscriptome123Y
F103124Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208975_100001959F103124N/AMHPIAFRKALIEAYIAGSESMYCGCYERRTKQDAAEWFDNEYGAQESQECDCCDDDDE
Ga0208975_100001963F004953GAGMMLVQATWQESQTFRMIPTGNDCPYVECIFDPSTKVFVVISKIKKTTLHMLPKLDEYGQPLTGNKGMKQERHKLEVFQEFYVEDFEAMQELIKLFAINADTFDYKKFMSESEPA
Ga0208975_100001972F069688N/AMEKRINIFTVDTVIEDGSYIKVTGVYQIPEGSPFERGDILTEDKYNGHQIYVAFATKDENGKDGLVLDDKSRHPTIKKPFSEKLIKDLKLGIHLFKIED

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