NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209357_1004901

Scaffold Ga0209357_1004901


Overview

Basic Information
Taxon OID3300027656 Open in IMG/M
Scaffold IDGa0209357_1004901 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5225
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016365Metagenome / Metatranscriptome247Y
F074452Metagenome / Metatranscriptome119N
F082595Metagenome / Metatranscriptome113Y
F083781Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209357_100490111F016365AGAAGGMNDLIKITLATGAIVYGMTAPLPANEAVKETQDAINKWYETASTSISQDFTALGVTVSNMPEKISLGVSNFVDETVAFQKESWAKTLTFEQEKQNWETIKGWFTPATEGEKK
Ga0209357_100490117F082595GGAGGMTIPMKTFRFQVVINNQLPAIIIEQRAINVNQATQAVQAQYGSESKVQFYGMVNDNG
Ga0209357_10049016F074452GGAGMIPDNKSFGRHGAGRLGTDPFVREEISETQRAQDYWEMSYVDEDNRIRYRLSCVLVEEEILDLLYCHGHITADQQAATINQTRRTE
Ga0209357_10049018F083781GGAGGMININREKFEKEILDLAKKGNGNSPSFTGGSLYAEMIDTDHAELLRADLEDFANANWGDGTKTSPYSTAVKMYKLADQNGRTEFVYDFVPSATAEDLPPEVDMMLCLEAEIARGK

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