Scaffold Ga0209357_1004901

Overview

Basic Information

• Taxon OID: 3300027656
• Scaffold ID: Ga0209357_1004901
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5225
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016365	Metagenome / Metatranscriptome	247	Y
F074452	Metagenome / Metatranscriptome	119	N
F082595	Metagenome / Metatranscriptome	113	Y
F083781	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209357_100490111	F016365	AGAAGG	MNDLIKITLATGAIVYGMTAPLPANEAVKETQDAINKWYETASTSISQDFTALGVTVSNMPEKISLGVSNFVDETVAFQKESWAKTLTFEQEKQNWETIKGWFTPATEGEKK
Ga0209357_100490117	F082595	GGAGG	MTIPMKTFRFQVVINNQLPAIIIEQRAINVNQATQAVQAQYGSESKVQFYGMVNDNG
Ga0209357_10049016	F074452	GGAG	MIPDNKSFGRHGAGRLGTDPFVREEISETQRAQDYWEMSYVDEDNRIRYRLSCVLVEEEILDLLYCHGHITADQQAATINQTRRTE
Ga0209357_10049018	F083781	GGAGG	MININREKFEKEILDLAKKGNGNSPSFTGGSLYAEMIDTDHAELLRADLEDFANANWGDGTKTSPYSTAVKMYKLADQNGRTEFVYDFVPSATAEDLPPEVDMMLCLEAEIARGK