Scaffold Ga0209357_1003608

Overview

Basic Information

• Taxon OID: 3300027656
• Scaffold ID: Ga0209357_1003608
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6087
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056336	Metagenome	137	Y
F088364	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209357_10036085	F088364	AGG	MFRHDGDDLIPVNKFKPGETGHVNYYFGGQLYTHLGCWPIQNIIPRFLVPVHSAIFVNDEDRKPTICTEIVRRHSGPTQSPVSLDVYAPRPHFTVSFPGGLRISMGIKWVLVKKVSGTVHIQNVLGKMTQVEV
Ga0209357_10036089	F056336	AGGA	MQYWIDRVRVNGGPTDVTVVPVSFVTTEEHADQLKCIVAPEDEIVDGEEAAKNDWVFELKPGDVFPVQIIASIQATLDNSKFDGMMFPVVYRGSPVLEKRFYKRLSSENVQQSSMPIFNLNTPPVVSEV