Scaffold Ga0209799_1025403

Overview

Basic Information

• Taxon OID: 3300027654
• Scaffold ID: Ga0209799_1025403
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1305
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000149	Metagenome / Metatranscriptome	1910	Y
F000150	Metagenome / Metatranscriptome	1910	Y
F003431	Metagenome / Metatranscriptome	487	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209799_10254032	F003431	AGGGGG	MMTKSIIAVAAAFMFALTVGILTAKIAESGNDRASNPTIRTLALQY
Ga0209799_10254033	F000150	GGAGG	MSITPYLGDFDANPETKRVLGVALEMTRVSLGLADDFADGIITKRIVERAKAGERNPDLLCQGALEELRGHLYGD
Ga0209799_10254034	F000149	AGGAG	VTLILYYVAFMIGGDFAAYFLGLLVEYEWGTNVSLIVFLALYFFSLWVAWMLAVWVTTPRGATSSAR