Scaffold Ga0209007_1000203

Overview

Basic Information

• Taxon OID: 3300027652
• Scaffold ID: Ga0209007_1000203
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31547
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (79.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004703	Metagenome / Metatranscriptome	427	Y
F037877	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209007_100020327	F037877	AGGA	VLNICSGFVGGFCQVGFNLDRPEQSAEVVVQMVQVLEGSEICRRFGGGSDRNRALLGNEGNSMHYMQIVQSRINTACFASC
Ga0209007_100020331	F004703	AGG	MAEKEAIPQQPVISIRISDALRLRLETLRKIISLKSGQTVSTSEAAKQLLESARDDRLELVNLLSEPTDSLMRIRGKADSGLPLSQAEWTIVAHYCAVGAESFMNTAQGQISYETLAEILEAFLAAYVIVRKSKNSRLDFVYLMTLPGDKQVEAKEANDVGNEDVRRVVTRTIQMLRNPAQKRRKPILAVRNLYRLLDEEQFPNIEKLNDALWKHWTALWKVCARGHYSAHRKPLREKAPAETDDEDFELAVQPALPSMEEGGYRLDLVREEGNEFSPRLQFPGTLTPRYPVVGYPRIAEFRRLLEELDLERDLCQWQGYYFYAHTAIVENEQRGVFFFARENGIAFRFPREHWQSIRNLFRRAWQAPEVIHTWEAQMLEYGEL
Ga0209007_10002034	F037877	AGGA	VLNICSGSVGGSVQVAYNLDLPEQSVQVDLHMAQMQDEGEIWRRFGGGSDRNRALLSNKGNSMHDMQIVQSRINTACFASC