Scaffold Ga0209007

Basic Information
Taxon OID	3300027652 Open in IMG/M
Scaffold ID	Ga0209007_1000029 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027652 Open in IMG/M

Scaffold ID

Ga0209007_1000029 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	105183
Total Scaffold Genes	92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	78 (84.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

105183

Total Scaffold Genes

92 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

78 (84.78%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038324	Metagenome / Metatranscriptome	166	N
F053418	Metagenome / Metatranscriptome	141	N
F059173	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209007_100002953	F053418	GGAGG	MRALSRCALIAILTTGLLNIPAYGADEKPLGLVMQAENAHIGNANVAIGTTIFPGDTLATEAGGTLRLNFGASQLYLLSASSATLSTNASPTMVHAVVGHGTVGFSSSGSDHVELEIPEGVLRAANSEPAYGQVTIVGPQEVIISAYRGTLALDHDGDTREIPAGKSFRVTMDLEPAASPQPQAPAGVGGGSPKKALNTNTLAWAAVAVAAAGGTAYGIWYVLSESSSAPN
Ga0209007_100002957	F038324	GGAGG	MRSIARSCIAAMLASLMAFPGFAANEKPLGLVVQAQSAEVSNVKLAIGTTVYPGDKVETDAGGTLRLRMGTSQLYLLASSSATLGQRTDSLFAEVARGTVGFSSNGADQFELEVPQGVIRASNGQPAYGQVTIVNPQEIIVSAFHGSLVLDNDGELHTIPEGKSYRVTMDLEPAVATPAPAAAPYRDNADNTPAKRRRKKLAFIILFGGIGALASYGIWTVLSESPSN
Ga0209007_100002963	F059173	GAG	MRRRLEALTVMLLALVCSVGMRCGEQSTAGTVVVIGWSRTEIVVAVDSRGFDDNEKYRDDICKIVRLDDRSVFTAAGNIIHARNGRALWNAQKEAIHAFQEAESTGNARLLRTAARNWGDDMVAAINQALKDDPAGSKLMLDKNIFLTGVFLGFENGSTAMYQVEIVFDASTQQAKENFYTEHHTTAIEFGALGRNEIVNEVVAGTTHFARAEQRKWAAAERSISIKDRDVRWAIRLVQLTMEYHPQRADVGGPIDALEITRRGIRWVERKPGCNP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209007_1000029

Overview

Ecosystem & Geography

Associated Families

Sequences