Scaffold Ga0208960_1020469

Overview

Basic Information

• Taxon OID: 3300027649
• Scaffold ID: Ga0208960_1020469
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2576
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041754	Metagenome	159	N
F078244	Metagenome / Metatranscriptome	116	N
F081250	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208960_10204692	F078244	N/A	MKDIINETFKKHLKLLRGRLNENFDEDAYDKVDKFIKNAVMADSQMELMKNRDSLILIVKTFMEAIGRKPYSDRTVEIHIDAVMSGSSRYVSRRDNPDIVTPGIGGKTNTSHVDVEDEDDDAAGKRLGYKL
Ga0208960_10204693	F081250	N/A	MNFNYRDFFIHNDDLHIIKEQLSIIDEMARVANDNALEPNAEAVWKMYDKGGELDNEKIAANLGINVDTVKKIIAICEKKFLENKTVIQIANEMKLTDNTINVVLNNAIPDWERAQDRHFTKDAEEIYNLYKSGIKEPEKIVNLINQNRKQYLQIKEEKVNLVLKIVDIATKQMENDGVTNTREIERQINHTITRYTINKLIKNLDIGKIRYMHKFTEKQDAFILFNYLQGIGPSEIARKFNTEFSTDSKLNIGDGAIYARIKNTILKSDSESKISEYALELLGMYKDTYFQAVNIEDPKTKNLLTHYTPPETIKGKDKTGTGTNRDMSAHLGTVQTNFNTMLPPYYKS
Ga0208960_10204695	F041754	AGGA	MNHMKLNKILEKYHQTNNEWGLHTYNFGNSTSLGKRIGWVYNELMMNGRIDTIPNDILSSINELDSVTEYFIRNVITRDNFVGDDVYDRLKPYNADPWNREFLVYYGNVIHPEYYSVKNRDGWDKVFISVYFNNMVAKYSGMHITNESKVP