Scaffold Ga0208960_1019657

Overview

Basic Information

• Taxon OID: 3300027649
• Scaffold ID: Ga0208960_1019657
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2650
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F017788	Metagenome / Metatranscriptome	238	Y
F020851	Metagenome / Metatranscriptome	221	Y
F034566	Metagenome	174	Y
F054581	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208960_10196572	F020851	GGAG	MKDLVDLAISMTEMDTGMQLPLEEREAMAKRILDKLKTINLV
Ga0208960_10196573	F054581	AGGA	MCPHCNSKLIPLLYGFVDPKYVDMHKEGLIFLVSTTYHTKNSPTSYCKKCEESFDIKLS
Ga0208960_10196574	F034566	AGG	MRFKLKGIIWMQFVLIVILCLSLLFIGGDLKQARKMTLDQSNYCIKYTSDIIASSRLDLIREQDAHSRTVDKANSVIDDIVNRYNSLVARYNKSTGGTNYDPLSIYSYRIRP
Ga0208960_10196576	F017788	N/A	MPSAPAQAATKSLNTKGNKASCKTIKGNYKSEVIANWSNGLASDQDVLKEIDLNIKMLTTKQKNTNGKIKNSVGSWILAEKNTKTAIFDKNVEAITAAMDLKVKSVTEFDKLCNSIK
Ga0208960_10196579	F004475	GAGG	MSNWTEELNDKQKEDVWNFVVFTVKEIREQIAKDIEATIPLWRSRGFLKSRRTQKAFEASAAIARGQNEQING