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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027649 Open in IMG/M |
| Scaffold ID | Ga0208960_1000969 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15675 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F053809 | Metagenome / Metatranscriptome | 140 | N |
| F092936 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208960_10009695 | F053809 | N/A | MVTMLRQEIYTHYLFHNSYQYNSIMRPYTYTPKSHIRPYIRNTLRLINDQLPLLHLHVNYLSQLQLINRRRLHDFYVLSGKRHTREAGAIRVAEIGAAYAEDRIRAHLGALIVDNNDLLAEWFRLKTYTDGHTPLICSNRPALQMNAMPFDTDGVCTIQGDGIPHPADMRSTIQIIERILLPHAQSAARCCTITDYRNHNAAYMCVREFVRETKRSLDDVRQRLYFLQYDEIDLWRSVQNFEYNIEDSSTIIRELFANTQPTQPFSQVVTPTTNNGVAHNVRKSPNYLTRQHR |
| Ga0208960_10009698 | F092936 | N/A | LVIIAAIKIQSHIPLAPGALFTVENPAIVQKWMANGTLPLIFTAQSIKSVLHESELYEIPPVPQSKSQHGFILSGVDITLLNMQVTNINCGGAMCDGLNMYQNSVTADRCPCYNVLDREGKVCLVLSLKVSDTKNNITFCVHNHTSKSLTQLFMKRIPKGAVAATITGNQKHMGNLSTKVMEMLALGNDYDGFKISGWIKRGTIADSGVLQPPTGSKWDKPQQVDSGGLTYHLTKIEYASPPSDRMLGEYQFNAGSLV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |