Scaffold Ga0209420_1000947

Overview

Basic Information

• Taxon OID: 3300027648
• Scaffold ID: Ga0209420_1000947
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14361
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F003337	Metagenome / Metatranscriptome	493	Y
F004095	Metagenome / Metatranscriptome	453	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209420_10009474	F002101	AGAAGG	MTTPVLALPQTAPDGVPARKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVIEARCWWRADLYNLVLINVAGEIDSRDKFCTDLRSAVPPQRIAFFVGGPEYLAAAPHSDHAPAEPDADALHKEMVAALLTQDLLSSSQQRWGIMEACRKISSVRAVSEARTRAIRETPRPSRWAEAIEHHSVPSPLQPFFATEPVAQDAVAIETTAVETVALETVAPETEREELL
Ga0209420_10009475	F004095	AGGAG	MSGINGDKARFNRRRRQKISRRQSTGKMLKALAEKHLVAPAKQANLKEKVA
Ga0209420_10009477	F003337	AGG	VKISLGMSVSALRNSLCWVMALLCPLSLLAADTGGAVVHSKGGVSVNGAEVADSTAIFPGDVLETKPGFVANLDADGSSVLIQAESVVKFQANSLNLEHGSVSVGTSTRMSVHVNCIRIEPVSNDRTQFDVTDVSGTVQVAAHKSDVNITQSTVVRKVTPEGNSSASSIVHEGQQASRDEAAACGAAPRPGGPLNGLNTKWIEIGAAAGGGALALCLLLCKGSKSTSASPSQP