Scaffold Ga0209466_1001036

Overview

Basic Information

• Taxon OID: 3300027646
• Scaffold ID: Ga0209466_1001036
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5590
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051173	Metagenome / Metatranscriptome	144	Y
F065226	Metagenome	128	Y
F097098	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209466_10010363	F097098	GGAGG	MIRIDSDSHFTPSDAFAEVDPRYAEIGPHFEILPSGRYKVIYRARDPFVPQHIKPLREKGHSASDLGPAPRIDAMAQDGFDMQVLIPNNAPFLL
Ga0209466_10010367	F065226	AGGAG	MQSTAQDNSNEIVIDNQALPAATCEECGAKIYPHSFLQSHRERHQRRQRWYVKELRKLQYTMAHMRDLA
Ga0209466_10010368	F051173	GAG	MARIGAGPDKSDMRLNPDGTPVPGRAHEQGAAKPVLIEGSFFE