Scaffold Ga0209117

Basic Information
Taxon OID	3300027645 Open in IMG/M
Scaffold ID	Ga0209117_1000011 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027645 Open in IMG/M

Scaffold ID

Ga0209117_1000011 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	200562
Total Scaffold Genes	200 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	158 (79.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

200562

Total Scaffold Genes

200 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

158 (79.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002714	Metagenome / Metatranscriptome	535	Y
F007781	Metagenome / Metatranscriptome	345	Y
F009457	Metagenome	317	Y
F082192	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209117_1000011128	F009457	AGG	LLKEQQQSELSRILVSFAGAADFKAKIKIPARGKEFLMRLLLHATRWAAALLIVCITLALAVARDKSVWSYEGGLFVITNGSLPKGPCFRLAGRVTSGDFFDSLKRIDKESGTIFRRGSENVENFPDQLTLSFLVRDHYDQTCPPREGNPGAPKYLTRTMMSSLHLYLYWKRGVELRPVENVERKYFAVRQIIPQAAAQVHDLPERLEWAYEYVVPSAGVPLTDSLVLVLRDDDNHIVARVAARL
Ga0209117_1000011184	F007781	GGA	MLTPQQVLRIAIEIIFVLLGGLVVWLGLSGQIFFDRRKPGWLLLSIALILWGVRALYKPGQGRSRREQWTRGLSLTLLGLVMLAISRVPFLWVGRLLAFAGVLLMLRGLVGSVLVLRPR
Ga0209117_100001176	F082192	N/A	MVTHAERAHVGEATASAGSTIYDGDRLSTEAGGELRISSAALTLQLNAQTILTVRHPASPEGNTTAELASGTLVFSAAPTGNIVVVANDALIRPAATAPTVAHIRVVNRKEVRIYAQRGALEFSYHGESEVIPEGAAYRILLDPSETVAAVNSESEQVKKKSPRRHPTFFLWAIGIAAGVTIPVLLHAFESPDQPGPASSRKIP
Ga0209117_100001195	F002714	AGAAGG	MERLQAFLTAAREGGFVKVTESTEGTVLWLRKHAPDTFMETRQRMCINSLTNSVTVYWMAVPGKVNSKTFCGVPALQEWFKLRPETVVQP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209117_1000011

Overview

Ecosystem & Geography

Associated Families

Sequences