Scaffold Ga0209625_1031579

Overview

Basic Information

• Taxon OID: 3300027635
• Scaffold ID: Ga0209625_1031579
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1181
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016335	Metagenome / Metatranscriptome	248	Y
F040668	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209625_10315791	F040668	GGAG	MPAPYHAEEEFHEALRALIGAAPQRKRLENAYLDHLSDLQDAELPISQQAKFVQLRDTLTHGKQLDPEIVIEAMSDDEVAEAARQILTLYDGIMDAARSSPSPK
Ga0209625_10315792	F016335	GAGG	MRIKIEVVERAGWWRVKVCGLRHSRYRSRAAARHGAKRLAARVQKLSVQARSRVGRMQLGQRLRVAHCELYCIRTLLRGRR