Scaffold Ga0209339_1214525

Overview

Basic Information

• Taxon OID: 3300027632
• Scaffold ID: Ga0209339_1214525
• Source Dataset Name: Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1155
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Zanca-sant'andrea, Tuscany, Italy
• Coordinates
  • Lat. (^o): 42.8072
  • Long. (^o): 10.1411
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021878	Metagenome	217	Y
F042609	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209339_12145252	F042609	GGAG	LDWEVGCHNFAYFSTLVGDVLVKFRHDVFAAVYGGRGAILVELRDAMTAKPGHIMFVDNFGMSRVVVVVVVGGSEERLEVCHEKESDGVLLFLVGEFQLTILGVGILDLLRRVLETERNVVFESGRSGERVEAAVTHVCEKVMF
Ga0209339_12145253	F021878	GGA	VHVVTFCGVFEQQKIYVVLSAFFGAEIFYCEAFRIMFEREDVDADGGILFFEEGDLFGFHRIIYSTHVECGFVTGIIREAIFVDFRFV