NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208133_1017788

Scaffold Ga0208133_1017788


Overview

Basic Information
Taxon OID3300027631 Open in IMG/M
Scaffold IDGa0208133_1017788 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1855
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002935Metagenome519Y
F015600Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0208133_10177881F015600GAGGMETTQLDPRLQLAVNMGVSGTDILHGELKNLMLDAEVEYTEIEKEEREGGYSDAMLSMDRTRAEGRLDAFVEVYNLTYALS
Ga0208133_10177888F002935N/AGKKLAVIANGIYNLQYSSDFSECTVDGLLFVTLDEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGMWNGRVFISVDTVKECLTDQTADIADYIRVFGDRLDSNCSLWQSKMSVAEDMIVI

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