NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208942_1001842

Scaffold Ga0208942_1001842


Overview

Basic Information
Taxon OID3300027627 Open in IMG/M
Scaffold IDGa0208942_1001842 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7545
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.5046Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F053753Metagenome / Metatranscriptome140Y
F076869Metagenome / Metatranscriptome117N
F098653Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208942_10018421F076869N/AMITQFMITEITKLISSAQKQNVILSAEYIDALYELNIQDIVMLRNSYESEKILS
Ga0208942_100184210F098653N/AMCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIRDYRKYN
Ga0208942_100184213F000716N/AMEKLKQDLQNYQINSKTYVKYDTDGLNQYQNYLYKRALYGLSSLTEQELATMCSKKKQRIINVYKKAQIVLNKLKQDLTISYSNFIFKTLFPNSPITEYLLSDIETDTSFKNTLTFKDLDINKDKIITIFISEGILPRNFLSLELPQNQLPRLKNESKS
Ga0208942_10018427F053753N/AMNHQLKYGYSQLGTNILVKINCKMSNQQAIELEKKFPEICMWQTRNGYRIEGSFNTRENNRYVYDKFEDFKLSLALNLNDFKINKLIDKNQVLLNQGNLELSVADLDLPF

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