Scaffold Ga0208942_1000197

Overview

Basic Information

• Taxon OID: 3300027627
• Scaffold ID: Ga0208942_1000197
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27400
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (84.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000649	Metagenome / Metatranscriptome	960	Y
F004450	Metagenome	437	Y
F011669	Metagenome	288	Y
F046892	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208942_100019714	F011669	AGGTGG	MNDDDEDYELANLMLLIAKCILAMFVLTGIAGIAGFIWGML
Ga0208942_100019715	F004450	N/A	MNWLAAGLIALVMSAAYLLDGPSEHEARVDTAEEKIQKLCGENAGWKMLDDGSIQCYTHRGFKTRKVAL
Ga0208942_100019746	F046892	GAG	MATAPTSRKLNLTRDQLAAFLTDQQQIRQFELLFSTVDTIQVIVGTDFEYQADTAAANANNALAQISA
Ga0208942_10001976	F000649	GGAGG	MSKTKPHYLPSGKPYKGETHKAGTVLMTGAKHTPASKRLTHTPPKKK