Scaffold Ga0209149_1195013

Overview

Basic Information

• Taxon OID: 3300027626
• Scaffold ID: Ga0209149_1195013
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1287
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Auchenorrhyncha → Fulgoromorpha → Fulgoroidea → Delphacidae → Delphacinae → Nilaparvata → Nilaparvata lugens (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021878	Metagenome	217	Y
F042609	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209149_11950131	F021878	AGCAG	VVLSASFGADIFYCEAFRIGFESEDVDADGGILFLEEGDLLGLDGIIYSGHVECGFVTGIICEALFVDFRFV
Ga0209149_11950132	F042609	N/A	VSGCIKIGGHNFTYFSTLVGDVLVKFRHDVFAAVYGGRGAILVELRDAMTAEPGHIVFVDNFGMSRVVVIVVGGSEERFEVCHEKERDGVLLFHVGEFHLAIVRIGILDLLRWVLDRQECGFRERTSGRTGEDSCCMRELHRCVWICVPLNWTCWLRARNDVLWCLRAAEDLCGAVCLFR