NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208044_1155265

Scaffold Ga0208044_1155265


Overview

Basic Information
Taxon OID3300027625 Open in IMG/M
Scaffold IDGa0208044_1155265 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)633
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003969Metagenome / Metatranscriptome459Y
F035411Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0208044_11552651F035411GGAGGMPDSENGCGAAVAEIKASTELARDFTLFQIEESLVLLAESAEEEGLTPEIERALTVYLEGAAEKRDRVADFIHFCEGMAELAKAEGKRLQVRQKHFEATAER
Ga0208044_11552652F003969N/ARNAAPTGLTSRNMAARFTSMRSVLGVPEYGDILGRHGYREVTNIPSLEKARDVYRMLLDAFRVHFGEAKRTLGNSEYVKILSELRLNPKAKLNPDQAVRVFNRMEETLNARQ
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