Scaffold Ga0208951_1001499

Overview

Basic Information

• Taxon OID: 3300027621
• Scaffold ID: Ga0208951_1001499
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10105
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056336	Metagenome	137	Y
F096897	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208951_100149919	F096897	N/A	EVDYVFERNSLSKAIYNYMIRWTQDNKSPMDDPGTTWIEAEEAWNSLSPETKGLLLAIANKERQQAIDIRDGLLATLHGYQGVKRIKDAYVDCIRVCCSQLN
Ga0208951_10014992	F056336	AGGA	MQYWIDRVRVNGGPTDVTVVPVSFVTTEHADQLKCIVAPEDEIVDGEEAAKNDWVFELKPGDVFPVQIIASIQATLDNSKFDGMMFPVVYRGSPVLEKRFYKRLSCENVQKSSMPIFNLKTPPVVSEV