NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208736_1008569

Scaffold Ga0208736_1008569


Overview

Basic Information
Taxon OID3300027618 Open in IMG/M
Scaffold IDGa0208736_1008569 Open in IMG/M
Source Dataset NamePolar desert microbial communities from Antarctic Dry Valleys - UQ255 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2574
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctic Dry Valleys
CoordinatesLat. (o)-78.0486Long. (o)163.8053Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006620Metagenome / Metatranscriptome368Y
F022920Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0208736_10085692F022920N/AMPDAVHELLATEVALEKLGARHISAEEAGQLPRNRHMTVRDAHAGGEAAARRLMIGTTNGGRFLTLVIERTIDPTTWLIVTGWSSTAAERNLLAR
Ga0208736_10085693F006620AGGMSSDPWTADDPQPGDFDAVLATIDAAYVERHDGDPNATLRILVSVEGEDARRLERIAEARGRTPHDVVAELLRDADRPAA

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