Scaffold Ga0208736_1001822

Overview

Basic Information

• Taxon OID: 3300027618
• Scaffold ID: Ga0208736_1001822
• Source Dataset Name: Polar desert microbial communities from Antarctic Dry Valleys - UQ255 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5534
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctic Dry Valleys
• Coordinates
  • Lat. (^o): -78.0486
  • Long. (^o): 163.8053
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008258	Metagenome / Metatranscriptome	336	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208736_10018221	F008258	GGAGG	VSTGRRSVTQDPIEQALDKLGTYGLPVEEIGAKAGALFGSLPSFDLFEIVDQVGAIDPTEIDFGEILGEVKARFDELDPALKVPVAVAAGFVGARVVRWIVR