Scaffold Ga0209122_1079058

Overview

Basic Information

• Taxon OID: 3300027613
• Scaffold ID: Ga0209122_1079058
• Source Dataset Name: Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1550
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Italy: Sant'Andrea, Tuscany
• Coordinates
  • Lat. (^o): 42.8072
  • Long. (^o): 10.1411
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005868	Metagenome	388	Y
F012932	Metagenome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209122_10790581	F012932	GGAG	LMVWKVVIERVTVIKFRMDNRGGNSAGCFEVEIWADTAKFTNVIVAGFRKCRDLVREGKVFITDKAKVASRVGCSERRLRRVMNFRKLLFKSDKKKLSFKRVESKKVCSHPGRDLL
Ga0209122_10790582	F005868	N/A	MSKIGLVQSHCHEGRPVGKRSLKGEGFVEKVNFEPGVKE