Scaffold Ga0209221_1000245

Overview

Basic Information

• Taxon OID: 3300027609
• Scaffold ID: Ga0209221_1000245
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28488
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002611	Metagenome / Metatranscriptome	543	Y
F012841	Metagenome / Metatranscriptome	277	Y
F024852	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209221_10002451	F024852	AGGA	MAIDTEFQKKLQIFLLVAIVVAGGRAAYVVYERHEAMKEDTAPKQERALNADYYVTPKRLHAYDLTSAREQLMQQPVWVKYGDQLTYYPYNAARHTTDFAHEAGTLGPLQKLRIQD
Ga0209221_100024521	F012841	AGCAG	MKPTAVKDEAAAKTKFRMFFIPCSCGNTFSVAEAYDRRGMHLRSFIPCPKCGKRHDPRNRLLTLDYQNERFWKVGSC
Ga0209221_10002455	F002611	N/A	VKAYKIQRIKSGMKFSCTHCNHSVSTLDFDAKAGNLRTQAATAINLHATQAHRQPMVVSPSDSQQRSWR