NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1039894

Scaffold Ga0208974_1039894


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1039894 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1383
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001176Metagenome / Metatranscriptome756Y
F001280Metagenome / Metatranscriptome732Y
F039131Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10398941F039131N/AMVEDEIYKLEGYFQRKYTKLIVDQIKNFEFPDDWTPKQVIDYITYKIDRE
Ga0208974_10398944F001280GGCGGMCVECGCESLGSETGILDIPGGILDVSRDGEAGLTLNMTSTPEQTRQFINE
Ga0208974_10398945F001176N/AMSENGTGMATPPNNQPSGAVTSQEVARKKPTQSKFRSGITTPRPPTKVDTNKHGIRRETVLGQKKTGRPKKD

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