Scaffold Ga0208974_1031197

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1031197
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1606
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021537	Metagenome	218	Y
F039139	Metagenome	164	N
F078705	Metagenome	116	N
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10311971	F039139	N/A	NAFEFTSEDIVTILRAHDTDITIQQLAEIHEILDHDSIIRSALQYNEPNMQLKSALSKAEDLMLMDGLYITEPKRFHVDD
Ga0208974_10311973	F078705	N/A	MYIAVDAMAIEDDPKLSYLLFPYDEDLLEAIEENLKEIRVEDEIIFSLDDVLLIRGEFHYVRKKVTMTDISEHRFSLGHNTESIPILENSKLHVANDYFYFSGYRKGTKNDKSNLKYVSGNFNLITIEKLRKYVKSKRDMVK
Ga0208974_10311974	F103253	N/A	MEEKVWIYLSKTGTGFELKGADIISAFDAFINADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNVLTGFAKNVDIPENLKKSISENYTFDEEETENANS
Ga0208974_10311975	F021537	GAGG	MQTREQKIKLLKKTIETLWHGVSDTREGDYPRIISLYKEVLMHDYHDADSWENMVWLMWSMAINKKDTVWLFQAEKF