Scaffold Ga0208974_1028106

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1028106
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1709
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F005348	Metagenome / Metatranscriptome	403	Y
F014849	Metagenome / Metatranscriptome	259	Y
F100416	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10281061	F000808	AGGA	MEYNYSLTTSYDGELIHTLRVSDMLEAVRAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK
Ga0208974_10281062	F100416	AGAAGG	MGKVKEALMDILEHDLCYGYGWIYQGNGIDFDSEACECNPYSISADELMDWKLN
Ga0208974_10281063	F014849	N/A	VEGVKQMITNLDVIAIIIALLGCLTVMGLFWKQNIAQQKEIRRLRNELRKAFKV
Ga0208974_10281065	F005348	AGG	MISSVMTFKCDECNGAGYIFWGDNLAYDVEKCECENFALGTLFTTKEAD