Scaffold Ga0208974_1020301

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1020301
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2068
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043291	Metagenome	156	N
F051789	Metagenome	143	Y
F083939	Metagenome / Metatranscriptome	112	N
F095171	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10203012	F043291	GAGG	MRNLSYTTEVHSIDYGYLLVEFDYFESDDSVGLSETYDWFAYTVEAFESEPAGTEVTYELTAADQASIYAQIKKHHVAMLEDFHA
Ga0208974_10203013	F095171	GGAGG	MLNRTKFPRTFNEAFPNSMENGACIEIHVARLTIADKVVRVVSLIGLIVLALDCFIWRP
Ga0208974_10203014	F051789	GGAGG	MKIKTTVHIFYSKYSFDEKGQFLVFYAKVNDDENRTYVGEQEIEIEVPDNYDPRAQQIAALEKEKQKVMADYQKTVTDINNRINNLKAITA
Ga0208974_10203015	F083939	N/A	MNAEYIINSAKQTSETLYREHDADQVERLLYRIQLLEGHIRVLSTHIDNARDEIKTLQTELIAKDSK