NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1011329

Scaffold Ga0208974_1011329


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1011329 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2893
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011077Metagenome / Metatranscriptome295Y
F014144Metagenome / Metatranscriptome265Y
F037701Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10113292F011077GAGMMADNLTWAEEDVNLWKGWTYSPEKNRYYFDDIGNESLAAFWADEFLNQAYS
Ga0208974_10113293F037701GGAMIRSKEWRVNTRVWVSTGFNPRRIALGFSVDRFNANIDFLWFWVTIEY
Ga0208974_10113299F014144N/AMTNKRVAVCEVCNKEIEVRWGIFANDTLKRHIKEHVNGA

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