Scaffold Ga0208974

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1006983 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027608 Open in IMG/M

Scaffold ID

Ga0208974_1006983 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3804
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3804

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (66.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F018703	Metagenome	233	Y
F022400	Metagenome	214	Y
F024719	Metagenome / Metatranscriptome	204	Y
F026822	Metagenome	196	Y
F065721	Metagenome / Metatranscriptome	127	Y
F094887	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100698310	F022400	AGG	MRRTTIERSQRPTLRLVSGGVGERASAYSPFGPVKAGLITTQRTNEDQVLTELLNSLERKIVELSIKSCEVLNIFLSDTEHLVRHTSSFSHTDTTNKYERIL
Ga0208974_10069832	F065721	AGGAG	MTKYIANENGDWWEVVEGESLYLIDTANPDITRAMEEEDTNPYQDKFEYFIQEYGVKVGLNIGEEVKV
Ga0208974_10069834	F006618	AGGAG	MSKMKQHLESEVVITHSNEENTGWKRYISFDYQGNNYELTLYWGEFDGYDIVWRFCDGKQMIHTPAWVVEWDEEAHNGDSFESYLDGLTWERTK
Ga0208974_10069835	F094887	GAGG	MEKELKEIDEAITNLWWGAEISDKAKLWWNDHYQEIVERELAK
Ga0208974_10069837	F026822	AGGAGG	VSEPRYLSGDEYAHTGVELDIVKCKECASEYDYAEYHSYTCSDCEDEMIMRERVRANG
Ga0208974_10069838	F024719	N/A	MGEVVELPSRGKITVVFYEVSDSQNIAIWGGENPVEALKWYRNSPAGSKIWVSQYEVDEEDAELMLDSVEITPIVLATITDSIDRWSR
Ga0208974_10069839	F018703	GGAG	MKREVEQRIETAKAQAVRQRNYRRARDRALARLSNDYPNVYRTYLEEEMEADETMGKKWLDISGRTRSTTSRSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208974_1006983

Overview

Ecosystem & Geography

Associated Families

Sequences