Scaffold Ga0208974_1005570

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1005570
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4324
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F029678	Metagenome	187	Y
F065721	Metagenome / Metatranscriptome	127	Y
F094887	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100557011	F029678	AGGAGG	MNRVKGFIIFNQETGQKMATLPLTIPIGSTVEAYEKAGHKVGWAWEEGEGE
Ga0208974_10055705	F065721	AGGAG	MTKYVANENGDWWEVVEGESLYLIDTANPDITKAMEEEDTNPYQDKFEYFIQQYGVKVGLNIGEEVKV
Ga0208974_10055707	F006618	AGGAG	MSKMKQHLESEIVISHFNEESTGWKRYIAFNYEGNEYELTLFWDSFDGYDIFWREPDSTPDWVVEWDSEAHNGMSFEHYLDDLTWERTK
Ga0208974_10055708	F094887	AGGA	MKKELKEIDEAITNLWWGAEISDTAKLWWNDHYQEIVERELTK