Scaffold Ga0208974_1003997

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1003997
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5226
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033434	Metagenome / Metatranscriptome	177	Y
F039640	Metagenome / Metatranscriptome	163	Y
F061859	Metagenome / Metatranscriptome	131	Y
F062765	Metagenome / Metatranscriptome	130	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100399710	F081346	GGAG	MAKPDPNKPITHINPPTVVPTRVMPHKPGYNDQVVVPETEANPDKPAKPKKPRK
Ga0208974_100399711	F061859	GGA	MTIEIALIILGLALAACYVVLEYQKLAAPPYQEPVKPDMVEQWKAATKADTLDNIDNWNAKVGDKIWHKEAIPELESTPINPQAAWPFPTGRQP
Ga0208974_10039972	F033434	N/A	MLFKKQEINSLDFTGTEGLNVEAWETWAEQMQLSHLSTWLLPQLVAWYGSWTLVYDDKSNYDCLATVKHNCVDPKSRAFYMLSRIKRSLLVPVMTKAPDYGTLTPLILMGLKRMQGINYETFRGSSGLQYLLEPRLLDALVLPSTDLEVVDGLGSSRLLEIQKQGLTTKSGKTAGSIKPARSTWSLSGIQDTEIGHLPKLTQTILTQCWLAHPELRTPYMMLDLQDWDRMPQPLVTNDIFKAVQTQQPTKTKELADVLPWDL
Ga0208974_10039974	F039640	N/A	MNIEYLLQQAIRQEGEIDILHYTNLILLEACKLIKDTPTTSAFTTFDQAVAETQRADCFKSVYNQIVRNIEDVAATK
Ga0208974_10039976	F062765	GGA	MEWYRARGLTQKQTKTATEDTMFYNTGDTYTTEDITTNYSCGRIDIRGIPNEPYGDELGVPPMLSTDWRAFGDWLDTVETMSIWTLADLVTAYEQHNTKITWDTHE