Scaffold Ga0208974_1002771

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1002771
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6461
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047683	Metagenome	149	N
F054874	Metagenome / Metatranscriptome	139	Y
F081348	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100277131	F081348	GGAG	MFKKVPYGVKVRVRGNEQDGFIAEYTLHASRFTPFLADWRLISHYTHTPFTKYDTFPTFESAKEAAMAQYDSWINHYKREEETKRIAKSQSKVIWKHP
Ga0208974_100277134	F054874	GGAG	MPNENKGGTFAPADMPLIKNALFYYKNMLVATEDSERNTSDELAKVANLLHRIGRIA
Ga0208974_100277136	F047683	AGGA	MTLTVEQIELSFAAPAEGLADSYYPVLAYWIPIELLEDVRAAYRAAGTTIRVRYRGPRTVSVGREMSRPDKTTYTRSYHRAMQDCLIADATHFTVYDYTAR