Scaffold Ga0208974_1002693

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1002693
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6565
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026861	Metagenome / Metatranscriptome	196	Y
F040535	Metagenome / Metatranscriptome	161	Y
F047645	Metagenome / Metatranscriptome	149	Y
F058095	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100269313	F026861	AGGTGG	MKLDEFKALIESQRKAQQLTNLEKIAKIVSTTNTKKGKN
Ga0208974_100269316	F040535	AGG	MLTLNYTVSKEDTILTTSDMLMINERQINDLMESLVAYGFTVEAMSVAPATL
Ga0208974_100269321	F047645	N/A	MTCIHVFEYVHRETCPHCGRYTHEPDHTLNSKLFKEFYESEEPKKYICPIDGGTIRGWWS
Ga0208974_10026936	F058095	GAGG	MEYAYVLTTYYDGELFSTHRIHDFIDASEVWNSISDHGNAKEYATYNLTDPTGKMFTKNFYSDGRVSVK