NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1002693

Scaffold Ga0208974_1002693


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1002693 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6565
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026861Metagenome / Metatranscriptome196Y
F040535Metagenome / Metatranscriptome161Y
F047645Metagenome / Metatranscriptome149Y
F058095Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100269313F026861AGGTGGMKLDEFKALIESQRKAQQLTNLEKIAKIVSTTNTKKGKN
Ga0208974_100269316F040535AGGMLTLNYTVSKEDTILTTSDMLMINERQINDLMESLVAYGFTVEAMSVAPATL
Ga0208974_100269321F047645N/AMTCIHVFEYVHRETCPHCGRYTHEPDHTLNSKLFKEFYESEEPKKYICPIDGGTIRGWWS
Ga0208974_10026936F058095GAGGMEYAYVLTTYYDGELFSTHRIHDFIDASEVWNSISDHGNAKEYATYNLTDPTGKMFTKNFYSDGRVSVK

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