Scaffold Ga0208974_1001971

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1001971
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7856
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001538	Metagenome / Metatranscriptome	674	Y
F002099	Metagenome / Metatranscriptome	593	Y
F046906	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10019714	F002099	N/A	VRWLIALVLTLSLHSAGQDLCSVREFYIIAYTIHNPTERHQQMSAWLTKHKTLCKSSDMTVIWNNLSEWAGSADSAELRHKVIIAYKNALEREKK
Ga0208974_10019715	F001538	GAG	VIDTIKLFPTVQPSGYPDRHDLAQVKLEKQHEMNKANELAKQKQTQLQDIAFEIYTKKVVQERLRMEIFQNRKLDIYV
Ga0208974_10019716	F046906	GGA	MYDQEADNETSDRSQRQVNPVGDSHGKRNPVHLCFGYGNQLYAWPLGQRSGQRRDIQDDFTRFFYSYRRHDWLPEWYQANAK
Ga0208974_10019719	F000166	AGG	MSNIPTPEDAQLFAQSVRKWQQILSLCDWRIEKGMKPAKAAMASVEFTPAARLAVYRLGDFGAEKITPDSLDKTALHELLHIFLYDLLCTATDVKSSDEDREMQEHRIINTLENLLTKDSNGRT