NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1001961

Scaffold Ga0208974_1001961


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1001961 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7890
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009140Metagenome / Metatranscriptome322Y
F012211Metagenome / Metatranscriptome282N
F032955Metagenome178Y
F034109Metagenome175N
F040534Metagenome / Metatranscriptome161N
F046258Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100196111F032955N/AMNIHEAHDLLDRRKQGFAVPLYLVNRALLISGDISMACSPCQATWVESTSMAQGEGVGVMPDSLMAWNKNRFDEPHESPI
Ga0208974_100196113F034109GAGMANKINPNRTQTDLKLDLSAEQRAILETLGRGNMTQGIRVAIDQAGHFFNCGLEPEMDLRYVGLVTTLPNQDDD
Ga0208974_10019614F046258GGAGMKHLTIAIKRVLSYFEIVTLQPSLPILLRDKTPARMTLPTLSITDPKFVYKNASCTDITHTFQKAKDERLQRLQHDANLNRTKDQGTGEQVSKQKLRRVHG
Ga0208974_10019615F012211AGGAGMPTDEERFKYECWTVVQELDPDDIADAIQDSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTPWIDDIEELQHYRNLRIDRVQKALDERKITAAKMDGPFQQMFDE
Ga0208974_10019616F009140GGAGMRLNLTHRSLLKRLSSGPRTMIDLTHAATDNNSVSFHYQRYLPELERFGYVINHDQKWHLTEYGRMEMNRAISGAAMRIENGSTIEKYDGKELRMSVFRRGCYDFLQLPSRFGDIFVPRKTPT
Ga0208974_10019618F040534AGGAGMNTDKSGEGRRLSLSTLGETMSEEEFEDKMNTYELDQQYAEYIMERRNVGNGEILIRFMEMGELYEDFKEHIMWGGK
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