NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1001167

Scaffold Ga0208974_1001167


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1001167 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10389
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (17.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F010462Metagenome / Metatranscriptome303Y
F048248Metagenome / Metatranscriptome148Y
F074450Metagenome / Metatranscriptome119Y
F076942Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100116713F048248AGAAGMRISVNYDNTDVAKALGKILKDPNAEEFVKLLTPMICTSQHASEYFFKLMLGNKLPEIIPNGTLCRTSVANLGYGSNKEAIKEKFADADGNVIVTIKEFRGFHEYSQYHIEYTDVLDNGTTKTDITYVQYKDLEVIEEF
Ga0208974_100116714F010462AGGMIYIYLHIYMHVMLYQLPNGKVVDLSIEEYLDLTDEDVQYLMSIDYGQHITNPFKGSAVDQNTKEKYYDFEFLSQEYEDPNDIISDDIPFDDIIDLSDNLDM
Ga0208974_100116715F076942GAGMNSKVIVLADETTGAVVNVSQNNTDYGYIRVQQVRTMIDDNGFLRRKPVSALIPGTLAELKDSSFFAGQQLDGKIVVEESLEPFNEKTPERDLKIAGETGVVCTLGGLPIYRRTKMSFDGSASDTLIKHDNVEQLRAAYAAQSTKSKAITPNEDFSIGG
Ga0208974_100116716F000716N/AMEKLKIQVRNYQLDGSKTYMQYEQDKYSVYQNYLYKRALYGLESLTEEELTTMCSKKKQRIVNVFKRAQTVLNTFKQRLTIKYSNDFFELFFPNAKLTQDVLECTEVDEKYKNTLTFKDLKVSKDDIITIFIAEGILPKNFLSLKESPITLPSLKNESKTQRM
Ga0208974_100116721F074450N/AMEDYTKDDVISAFLKITQKSRKRVLVDQRSYLIGVLAFRFMMSEHAIADAVGYKRTNINYNKRLVLQLHNDKSYMENVYVYAQLFPFDFDVIEVTTKVERSRRIELDLDNKFYNKLKAAGSILGHADIRITIKSFLEKSLKLWEE

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