Scaffold Ga0208974

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1001167 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027608 Open in IMG/M

Scaffold ID

Ga0208974_1001167 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10389
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (17.86%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10389

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (17.86%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F010462	Metagenome / Metatranscriptome	303	Y
F048248	Metagenome / Metatranscriptome	148	Y
F074450	Metagenome / Metatranscriptome	119	Y
F076942	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100116713	F048248	AGAAG	MRISVNYDNTDVAKALGKILKDPNAEEFVKLLTPMICTSQHASEYFFKLMLGNKLPEIIPNGTLCRTSVANLGYGSNKEAIKEKFADADGNVIVTIKEFRGFHEYSQYHIEYTDVLDNGTTKTDITYVQYKDLEVIEEF
Ga0208974_100116714	F010462	AGG	MIYIYLHIYMHVMLYQLPNGKVVDLSIEEYLDLTDEDVQYLMSIDYGQHITNPFKGSAVDQNTKEKYYDFEFLSQEYEDPNDIISDDIPFDDIIDLSDNLDM
Ga0208974_100116715	F076942	GAG	MNSKVIVLADETTGAVVNVSQNNTDYGYIRVQQVRTMIDDNGFLRRKPVSALIPGTLAELKDSSFFAGQQLDGKIVVEESLEPFNEKTPERDLKIAGETGVVCTLGGLPIYRRTKMSFDGSASDTLIKHDNVEQLRAAYAAQSTKSKAITPNEDFSIGG
Ga0208974_100116716	F000716	N/A	MEKLKIQVRNYQLDGSKTYMQYEQDKYSVYQNYLYKRALYGLESLTEEELTTMCSKKKQRIVNVFKRAQTVLNTFKQRLTIKYSNDFFELFFPNAKLTQDVLECTEVDEKYKNTLTFKDLKVSKDDIITIFIAEGILPKNFLSLKESPITLPSLKNESKTQRM
Ga0208974_100116721	F074450	N/A	MEDYTKDDVISAFLKITQKSRKRVLVDQRSYLIGVLAFRFMMSEHAIADAVGYKRTNINYNKRLVLQLHNDKSYMENVYVYAQLFPFDFDVIEVTTKVERSRRIELDLDNKFYNKLKAAGSILGHADIRITIKSFLEKSLKLWEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208974_1001167

Overview

Ecosystem & Geography

Associated Families

Sequences