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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027608 Open in IMG/M |
| Scaffold ID | Ga0208974_1000907 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11811 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (77.27%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025740 | Metagenome | 200 | Y |
| F033788 | Metagenome | 176 | Y |
| F034180 | Metagenome / Metatranscriptome | 175 | Y |
| F065777 | Metagenome | 127 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208974_100090718 | F025740 | AGGAGG | VTDRQTHWTIFFIAVVVGLILLSTIIKVDDQLERSRLAVVDMQKQIDKLKAEDQELKHLIVKLTNANLSLNKDLDVTQELQRKQAQAIVDLRKGKKK |
| Ga0208974_100090719 | F065777 | N/A | MIHELKQLTTKEVMIMIEGSVKAIVDDPGYFYSSGVGPQYSKLTPSGCDMVLKTMTALLPLLAQAKERELDDRAKSITWNSLQEEDIQ |
| Ga0208974_10009072 | F033788 | N/A | MEILHTIWTVISIFSVVFTVMFVYVFLKNLRNELGLLKEVKKFKQTVKLVYIEQVDGMYRMHDKFTHNYICQATTEEELWDLAKEQLPNMKILTADVEVTKQ |
| Ga0208974_10009078 | F034180 | AGGA | VNIKKLSLAVAGALLVVGCASNQGVVKNAELRPDTDSIRPKPVSTVFHRPQGTMTITFDSKGEFLEITSKGTAPIAGNNAFSIEQAAQVAQLRAKRNIAEFISTQLQTTRSVKVLSTAVQKSLENTTNGMSEEVKIDDKDFDADGNPVIINAYNDGSKDTAPKPVVEGNPNTNSEKVAEIVRENITTSSSALIRGAVITDEKIDQAGRTIVVEIKTGTSTVKAANELRKLMGSN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |