NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000907

Scaffold Ga0208974_1000907


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000907 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11811
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025740Metagenome200Y
F033788Metagenome176Y
F034180Metagenome / Metatranscriptome175Y
F065777Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100090718F025740AGGAGGVTDRQTHWTIFFIAVVVGLILLSTIIKVDDQLERSRLAVVDMQKQIDKLKAEDQELKHLIVKLTNANLSLNKDLDVTQELQRKQAQAIVDLRKGKKK
Ga0208974_100090719F065777N/AMIHELKQLTTKEVMIMIEGSVKAIVDDPGYFYSSGVGPQYSKLTPSGCDMVLKTMTALLPLLAQAKERELDDRAKSITWNSLQEEDIQ
Ga0208974_10009072F033788N/AMEILHTIWTVISIFSVVFTVMFVYVFLKNLRNELGLLKEVKKFKQTVKLVYIEQVDGMYRMHDKFTHNYICQATTEEELWDLAKEQLPNMKILTADVEVTKQ
Ga0208974_10009078F034180AGGAVNIKKLSLAVAGALLVVGCASNQGVVKNAELRPDTDSIRPKPVSTVFHRPQGTMTITFDSKGEFLEITSKGTAPIAGNNAFSIEQAAQVAQLRAKRNIAEFISTQLQTTRSVKVLSTAVQKSLENTTNGMSEEVKIDDKDFDADGNPVIINAYNDGSKDTAPKPVVEGNPNTNSEKVAEIVRENITTSSSALIRGAVITDEKIDQAGRTIVVEIKTGTSTVKAANELRKLMGSN

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